Nathanaël Aubert-Kato

Peer-reviewed publications

See my google scholar page for an up-to-date list.

Topics: ALife (A), DNA Computing (D), Evolutionary strategies (E), Origins of Life (O), microRobots (R), computer Security (S), Wetlab implementation (W)

• [DER] W. Yahiro, N. Aubert-Kato, M. Hagiya, A reservoir computing approach for molecular computing. Artificial Life Conference Proceedings, ALIFE 2018 [best paper nomination]

• [DEW] A. Baccouche, S. Okumura, R. Sieskind, E. Henry, N. Aubert-Kato, N. Bredeche, J.-F. Bartolo, V. Taly, Y. Rondelez, T. Fujii, A.J. Genot, Massively parallel and multiparameter titration of biochemical assays with droplet microfluidics. Nature Protocols
• [DERW] N. Aubert-Kato, C. Fosseprez, G. Gines, I. Kawamata, H. Dinh, L. Cazenille, A. Estevez-Tores, M. Hagiya, Y. Rondelez, N. Bredeche, Evolutionary Optimization of Self-assembly in a Swarm of Bio-micro-robots. Proceedings of the Genetic and Evolutionary Computation Conference, GECCO 2017 [best paper nomination]

• [DEW] A.J. Genot, A. Baccouche, R. Sieskind, N. Aubert-Kato, N. Bredeche, J.F. Bartolo, V. Taly, T. Fujii, Y. Rondelez, High-resolution mapping of bifurcations in nonlinear biochemical circuits. Nature Chemistry
• [DR] M. Hagiya, N. Aubert-Kato, S. Wang, S. Kobayashi, Molecular computers for molecular robots as hybrid systems. Theoretical Computer Science

• [ADO] C. Scharf, N. Virgo, H.J. Cleaves, M. Aono, N. Aubert-Kato, A. Aydinoglu, et al., A strategy for origins of life research. Astrobiology
• [AO] N. Guttenberg, M. Laneuville, M. Ilardo, N. Aubert-Kato, Transferable measurements of Heredity in models of the Origins of Life. PloS one
• [AE] N. Aubert-Kato, O. Witkowski, The Hunger Games: Embodied agents evolving foraging strategies on the frugal-greedy spectrum. ECAL 2015
• [D] N. Aubert-Kato, A Specialized Tri-species Comparator for the DNA PEN Toolbox. New Generation Computing
• [DE] H.Q. Dinh, N. Aubert, N. Noman, T. Fujii, Y. Rondelez, H. Iba, An effective method for evolving reaction networks in synthetic biochemical systems. IEEE Transactions on Evolutionary computation

• [DW] N. Aubert, Y. Rondelez, T. Fujii, M. Hagiya, Enforcing logical delays in DNA computing systems. Natural Computing
• [DE] N. Aubert, C. Mosca, T. Fujii, M. Hagiya, Y. Rondelez, Computer-assisted design for scaling up systems based on DNA reaction networks. Journal of The Royal Society Interface
• [PhD Thesis] N. Aubert, Assisted Design of DNA Computing Systems: the DNA Toolbox and Beyond.
• [A] O. Witkowski, N. Aubert-Kato, Pseudo-Static Cooperators: Moving Isn’t Always about Going Somewhere. ALIFE 14

• [S] N. Aubert, M.A. Ayachi, C. Bidan, N. Prigent, The Hecate Attack. SAR-SSI 2013
• [DE] N. Aubert, Q.H. Dinh, M. Hagiya, H. Iba, T. Fujii, N. Bredeche, Y. Rondelez, Evolving cheating DNA networks: a case study with the rock-paper-scissors game. ECAL 2013

• [D] I. Kawamata, N. Aubert, M. Hamano, M. Hagiya, Abstraction of graph-based models of bio-molecular reaction systems for efficient simulation. Computational Methods in Systems Biology

Book chapters

• [DE] Q.H. Dinh, N. Aubert, N Noman, H Iba, Y Rondelez, Evolving GRN-Inspired In Vitro Oscillatory Systems, in Evolutionary Computation in Gene Regulatory Network Research, 2016.
• [D] N. Aubert-Kato, DNA toolbox, in BIOMOD虎の巻、DNA分子デザインの全て, 2016.